Re: A plea for the references on HIV purification 3 July 2003
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Brian T Foley,
HIV researcher
Los Alamos National Lab Los Alamos NM USA 87545

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Re: Re: A plea for the references on HIV purification

Recent papers:

Regier DA, Desrosiers RC.
The complete nucleotide sequence of a pathogenic molecular
clone of simian immunodeficiency virus.
AIDS Res Hum Retroviruses. 1990 Nov;6(11):1221-31.
PMID: 2078405

Takeuchi H, Suzuki Y, Tatsumi M, Hoshino H, Daar ES,
Koyanagi Y.
Isolation and characterization of an infectious HIV type 1
molecular clone from a patient with primary infection.
AIDS Res Hum Retroviruses. 2002 Oct 10;18(15):1127-33.
PMID: 12402946

Mochizuki N, Otsuka N, Matsuo K, Shiino T, Kojima A, Kurata
T, Sakai K, Yamamoto N, Isomura S, Dhole TN, Takebe Y,
Matsuda M, Tatsumi M.
An infectious DNA clone of HIV type 1 subtype C.
AIDS Res Hum Retroviruses. 1999 Sep 20;15(14):1321-4.
PMID: 10505681

Novelli P, Vella C, Oxford J, Daniels RS.
Construction and characterization of a full-length HIV-1(92UG001)
subtype D infectious molecular clone.
AIDS Res Hum Retroviruses. 2002 Jan 1;18(1):85-8.
PMID: 11804560

Ndung'u T, Renjifo B, Novitsky VA, McLane MF, Gaolekwe S,
Essex M.
Molecular cloning and biological characterization of
full-length HIV-1 subtype C from Botswana.
Virology. 2000 Dec 20;278(2):390-9.
PMID: 11118362

Ndung'u T, Renjifo B, Essex M.
Construction and analysis of an infectious human
Immunodeficiency virus type 1 subtype C molecular clone.
J Virol. 2001 Jun;75(11):4964-72.
PMID: 11333875

Takahoko M, Tobiume M, Ishikawa K, Ampofo W, Yamamoto N,
Matsuda M, Tatsumi M.
Infectious DNA clone of HIV type 1 A/G recombinant
(CRF02_AG) replicable in peripheral blood mononuclear cells.
AIDS Res Hum Retroviruses. 2001 Jul 20;17(11):1083-7.
PMID: 11485626

Earlier papers:

Adachi A, Ono N, Sakai H, Ogawa K, Shibata R, Kiyomasu T,
Masuike H, Ueda S.
Generation and characterization of the human
immunodeficiency virus type 1 mutants.
Arch Virol. 1991;117(1-2):45-58.
PMID: 1706590

Kuwata T, Igarashi T, Ido E, Jin M, Mizuno A, Chen J,
Hayami M.
Construction of human immunodeficiency virus 1/simian
immunodeficiency virus strain mac chimeric viruses
having vpr and/or nef of different parental origins and their in vitro and in vivo replication.
J Gen Virol. 1995 Sep;76 ( Pt 9):2181-91.
PMID: 7561755

Collman R, Balliet JW, Gregory SA, Friedman H, Kolson DL,
Nathanson N, Srinivasan A.
An infectious molecular clone of an unusual
macrophage-tropic and highly cytopathic strain of human
immunodeficiency virus type 1.
J Virol. 1992 Dec;66(12):7517-21.
PMID: 1433527

Dirckx L, Lindemann D, Ette R, Manzoni C, Moritz D, Mous J.
Mutation of conserved N-glycosylation sites around the
CD4-binding site of human immunodeficiency virus type 1
GP120 affects viral infectivity.
Virus Res. 1990 Dec;18(1):9-20.
PMID: 2082620

Fisher AG, Collalti E, Ratner L, Gallo RC, Wong-Staal F.
A molecular clone of HTLV-III with biological activity.
Nature. 1985 Jul 18-24;316(6025):262-5.
PMID: 2410792

Popovic M, Sarngadharan MG, Read E, Gallo RC.
Detection, isolation, and continuous production of
cytopathic retroviruses (HTLV-III) from patients
with AIDS and pre-AIDS.
Science. 1984 May 4;224(4648):497-500.
PMID: 6200935

Ghrayeb J, Kato I, McKinney S, Huang JJ, Chanda PK,
Ho DD, Sarangadharan MG, Chang TW, Chang NT.
Human T-cell lymphotropic virus type III (HTLV-III)
core antigens: synthesis in Escherichia coli and
immunoreactivity with human sera.
DNA. 1986 Apr;5(2):93-9.
PMID: 3011373

Heidecker G, Lerche NW, Lowenstine LJ, Lackner AA, Osborn
KG, Gardner MB, Marx PA.
Induction of simian acquired immune deficiency syndrome
(SAIDS) with a molecular clone of a type D SAIDS retrovirus.
J Virol. 1987 Oct;61(10):3066-71.
PMID: 3041028

Fisher AG, Ratner L, Mitsuya H, Marselle LM, Harper ME,
Broder S, Gallo RC, Wong-Staal F.
Infectious mutants of HTLV-III with changes in the 3'
region and markedly reduced cytopathic effects.
Science. 1986 Aug 8;233(4764):655-9.
PMID: 3014663

Adachi A, Gendelman HE, Koenig S, Folks T, Willey R,
Rabson A, Martin MA.
Production of acquired immunodeficiency syndrome-associated
retrovirus in human and nonhuman cells transfected
with an infectious molecular clone.
J Virol. 1986 Aug;59(2):284-91.
PMID: 3016298

Sakai K, Dewhurst S, Ma XY, Volsky DJ.
Differences in cytopathogenicity and host cell range
among infectious molecular clones of human
immunodeficiency virus type 1 simultaneously
isolated from an individual.
J Virol. 1988 Nov;62(11):4078-85.
PMID: 3172338

Sakai K, Ma XY, Volsky DJ.
Low-cytopathic infectious clone of human immunodeficiency
virus type I (HIV-I).
FEBS Lett. 1988 Oct 10;238(2):257-61.
PMID: 2458968

More papers related to serological analysis of the products
of cloned HIV genes, etc.

Chandra A, Gerber T, Kaul S, Wolf C, Demirhan I, Chandra P.
Serological relationship between reverse transcriptases from
human T-cell lymphotropic viruses defined by monoclonal
antibodies. Evidence for two forms of reverse
transcriptases in the AIDS-associated virus, HTLV-III/LAV.
FEBS Lett. 1986 May 12;200(2):327-32.
PMID: 2423366

Chakrabarti LA, Ivanovic T, Cheng-Mayer C.
Properties of the surface envelope glycoprotein associated
with virulence of simian-human immunodeficiency virus
SHIV(SF33A) molecular clones.
J Virol. 2002 Feb;76(4):1588-99.
PMID: 11799153

Gorny MK, Williams C, Volsky B, Revesz K, Cohen S, Polonis
VR, Honnen WJ, Kayman SC, Krachmarov C, Pinter A,
Zolla-Pazner S.
Human monoclonal antibodies specific for conformation-
sensitive epitopes of V3 neutralize human
immunodeficiency virus type 1 primary isolates from
various clades.
J Virol. 2002 Sep;76(18):9035-45.
PMID: 12186887

Zhang PF, Bouma P, Park EJ, Margolick JB, Robinson JE,
Zolla-Pazner S, Flora MN, Quinnan GV Jr.
A variable region 3 (V3) mutation determines a global
neutralization phenotype and CD4-independent infectivity
of a human immunodeficiency virus type 1 envelope
associated with a broadly cross-reactive, primary virus-
neutralizing antibody response. J Virol. 2002 Jan;76(2):644-55.
PMID: 11752155

Ball JM, Payne SL, Issel CJ, Montelaro RC.
EIAV genomic organization: further characterization by
sequencing of purified glycoproteins and cDNA.
Virology. 1988 Aug;165(2):601-5.
PMID: 2841805

Rekosh D, Nygren A, Flodby P, Hammarskjold ML,
Wigzell H.
Coexpression of human immunodeficiency virus envelope
proteins and tat from a single simian virus 40 late
replacement vector.
Proc Natl Acad Sci U S A. 1988 Jan;85(2):334-8.
PMID: 2829181

etc...

Competing interests:   None declared